Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hpaAHpaA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (275 aa)    
Predicted Functional Partners:
hrpD5
HrpD5; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.914
hrcR
hrpD2; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.880
hrcV
HrcV protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.862
hrcU
HrcU; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.854
hrpD6
HrpD6; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.848
FliN
Flagellar motor switch/type III secretory pathway protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.818
EscS
Type III secretory pathway, component EscS; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.813
hpaP
hrpC3; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.806
hpaB
HpaB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.796
hrpB1
HrpB1; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.793
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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