Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO0103Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (113 aa)    
Predicted Functional Partners:
XOO4134
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.806
XOO2875
Predicted acyltransferases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.798
XOO0110
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
Tra8-7
Transposase and inactivated derivatives, IS30 family; Putative; ORF located using Glimmer/Genemark.
      
 0.770
XOO3150
Predicted methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
nuoN
NADH-ubiquinone oxidoreductase NQO14 subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family.
      
 0.770
rpsI
30S ribosomal protein S9; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.768
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.764
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Blastx/FrameD; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.762
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
 
 0.757
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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