Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO0151Putative ISXo8 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (290 aa)    
Predicted Functional Partners:
XOO4704
Putative ISXo8 transposase; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
       0.689
Tra8-2
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.639
rpfN
Regulator of pathogenicity factors; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.579
XOO0150
Putative ISXo8 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.511
XOO2839
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.470
XOO2645
Cytochrome C4; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.461
cycM
Cytochrome C552; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.461
cycA-2
Cytochrome C2; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.461
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
   0.444
hflB
Cell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
    
   0.429
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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