STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tptCABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (311 aa)    
Predicted Functional Partners:
LolE-2
ABC-type transport system, involved in lipoprotein release, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.987
LolE
ABC-type transport system, involved in lipoprotein release, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.986
acrE
Acriflavin resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.847
lolC
Lipoprotein releasing system transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.770
XOO0155
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.762
XOO0156
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.762
lolA
Outer-membrane lipoproteins carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.611
XOO4315
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
   
 
 0.611
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
 
 
 0.601
gcp
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.561
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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