Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylRXylose repressor-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (394 aa)    
Predicted Functional Partners:
salR
Sal operon transcriptional repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.719
xylA
Xylose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the xylose isomerase family.
     
 0.685
xylA-2
Xylose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.685
avrBs2
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.653
XylB
Sugar (pentulose and hexulose) kinases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.617
XOO0427
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the MtfA family.
    
 
 0.616
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.554
fruA
PTS system, fructose-specific IIBC component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.540
dgd
D-galactose 1-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.516
tktA
Transketolase 1; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.495
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.