Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO0236IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (227 aa)    
Predicted Functional Partners:
XOO0238
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
XOO1394
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.747
XOO4524
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.609
XOO2745
Unknown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.588
mdoG
Periplasmic glucan biosynthesis protein; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs). Belongs to the OpgD/OpgG family.
       0.586
XOO1384
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.585
bioH
Biotin biosynthesis protein; The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
       0.572
XOO3929
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.560
XOO3027
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.558
XOO1650
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.543
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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