Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CirAOuter membrane receptor proteins, mostly Fe transport; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1085 aa)    
Predicted Functional Partners:
XOO1540
Predicted periplasmic protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.705
XOO2169
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.636
rpfD
Regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.614
XOO1292
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.605
XOO1293
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.605
CirA-2
Outer membrane receptor proteins, mostly Fe transport; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    
0.594
TonB
Periplasmic protein TonB, links inner and outer membranes; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.590
XOO2351
Predicted carboxypeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.581
prnA
Tryptophan halogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.571
RfaL-2
Lipid A core - O-antigen ligase and related enzymes; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.519
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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