Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
yadGABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (331 aa)    
Predicted Functional Partners:
CcmA-4
ABC-type multidrug transport system, ATPase component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    
0.873
yadH
Permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.863
XOO0677
ABC-2 type transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.851
ycfV-2
ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
0.755
yrbF-2
ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
0.599
poxF-2
Phenol hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.593
NosY-3
ABC-type transport system involved in multi-copper enzyme maturation, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.592
NosY
ABC-type transport system involved in multi-copper enzyme maturation, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.457
NosY-4
ABC-type transport system involved in multi-copper enzyme maturation, permease component; Putative; ORF located using Glimmer/Genemark.
  
 
 0.457
atpC
ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.430
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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