Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TolBPeriplasmic component of the Tol biopolymer transport system; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (302 aa)    
Predicted Functional Partners:
OmpA-2
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.740
OmpA
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.693
XOO2934
Endolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.680
queF
Conserved hypothetical protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.610
yhdG
Cationic amino acid transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.607
yhdG-2
Cationic amino acid transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.607
kefB-2
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.604
XOO1829
Histidine kinase-response regulator hybrid protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.601
dniR-2
Membrane-bound lytic murein transglycosylase D precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.586
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.567
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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