Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ankBAnkyrin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (191 aa)    
Predicted Functional Partners:
catB
Catalase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the catalase family.
 
 0.908
apaH
Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.746
XOO4272
Proteinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.744
AcuC
Deacetylases, including yeast histone deacetylase and acetoin utilization protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.739
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 0.718
XOO1407
Proteins containing SET domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.705
XOO2136
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.654
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.651
ybaR
Sulfate permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.651
gstA
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the GST superfamily.
    
 
 0.648
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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