Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yodBCytochrome B561; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (177 aa)    
Predicted Functional Partners:
srpA
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
 
     0.919
prtR
Transmembrane regulator protein prtR; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.610
exo
Exodeoxyribonuclease IX; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.599
prtI
ECF sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
       0.529
algH
Putative transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0301 (AlgH) family.
      
 0.481
algZ
Two-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.481
Tra8-8
Transposase and inactivated derivatives, IS30 family; Putative; ORF located using Glimmer/Genemark.
       0.441
ModA
ABC-type molybdate transport system, periplasmic component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.402
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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