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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parBChromosome partitioning protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the ParB family. (309 aa)    
Predicted Functional Partners:
parA
Chromosome partitioning protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.989
parA-2
Chromosome partioning protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.933
ftsK
Cell division protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.836
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.786
parA-3
Partition protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.775
gidB
Glucose inhibited division protein B; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.755
coaE
Conserved hypothetical protein; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.746
dnaQ
DNA polymerase III epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
     
 0.720
dnaA
Chromosomal replication initiator; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
  
 0.692
traH
TraH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.681
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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