Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ybdRZn-dependent alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (259 aa)    
Predicted Functional Partners:
XOO0331
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
XOO3715
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
glgY
Maltooligosyltrehalose synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.688
XOO0175
Topoisomerase IB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.659
virK
VirK protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.645
XOO2978
General stress protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.636
fruB
Multiphosphoryl transfer protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.575
XOO4029
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.505
GlgB
1,4-alpha-glucan branching enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.494
AdhP
Zn-dependent alcohol dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.409
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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