STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybdRZn-dependent alcohol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (259 aa)    
Predicted Functional Partners:
XOO0331
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
XOO3715
Transposase and inactivated derivatives; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
XOO0175
Topoisomerase IB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.659
virK
VirK protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.658
glgY
Maltooligosyltrehalose synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.651
XOO2978
General stress protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.636
fruB
Multiphosphoryl transfer protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.596
GlgB
1,4-alpha-glucan branching enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.572
XOO4029
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.499
gcvP
Glycine decarboxylase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.451
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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