STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msrBConserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the MsrB Met sulfoxide reductase family. (154 aa)    
Predicted Functional Partners:
pms
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 0.997
dsbD
C-type cytochrome biogenesis protein (copper tolerance); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.685
XOO4131
Disulphide-isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.685
rpmG
50S ribosomal protein L33; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.661
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.652
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.595
rpsP
30S ribosomal protein S16; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.589
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.589
rpmA
50S ribosomal protein L27; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.589
rplQ
50S ribosomal protein L17; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
   0.589
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.