Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uptDOuter membran protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (158 aa)    
Predicted Functional Partners:
uptE
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.824
lolA
Outer-membrane lipoproteins carrier protein precursor; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
    
 
 0.739
XOO4315
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
    
 
 0.739
uptC
Type II secretion system protein-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.575
Bfr
Bacterioferritin (cytochrome b1); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.544
XOO0776
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.466
LolE
ABC-type transport system, involved in lipoprotein release, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.438
LolE-2
ABC-type transport system, involved in lipoprotein release, permease component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.438
lolC
Lipoprotein releasing system transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.438
tonB
TonB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
   0.417
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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