STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smtAHypothetical protein; Putative; ORF located using Glimmer/Genemark. (266 aa)    
Predicted Functional Partners:
wxoC
Putative glycosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.688
wxoD
Putative o-antigen acetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.640
metB
Cystathionine gamma-lyase-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.623
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
      
 0.617
URH1-3
Inosine-uridine nucleoside N-ribohydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.602
cysB
Cystathionine beta-synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.469
PepO
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.406
PepO-2
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.406
PepO-3
Metallopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.406
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.