Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO0833Hypothetical protein; Putative; ORF located using Glimmer/Genemark. (70 aa)    
Predicted Functional Partners:
holC
DNA polymerase III holoenzyme chi subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.784
pepA
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.784
XOO4730
Hypothetical protein; Putative; ORF located using FrameD.
       0.773
XOO0835
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.546
XOO0836
Predicted permeases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.546
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.464
STE14-3
Putative protein-S-isoprenylcysteine methyltransferase; Putative; ORF located using Glimmer/Genemark.
       0.441
STE14-2
Putative protein-S-isoprenylcysteine methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.412
XOO0828
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.410
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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