STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xadA-2Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1265 aa)    
Predicted Functional Partners:
yapH
YapH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.888
ParE-3
Plasmid stabilization system protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.745
FimV
Tfp pilus assembly protein FimV; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.742
XOO2266
Putative phage replication protein RstA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.702
DAP2-2
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.669
XOO1599
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.660
XOO2268
Phage-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.624
XOO0347
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.589
XOO1293
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.579
cirA-4
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.578
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.