Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nodBAcetylxylan esterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (294 aa)    
Predicted Functional Partners:
rhgB
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
XOO1090
Glutaredoxin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.667
CDA1-2
Polysaccharide deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.520
Acs
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.490
XOO4315
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.485
AcpP
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides.
 
     0.473
XOO4312
Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase; Putative; ORF located using Glimmer/Genemark.
 
     0.449
XOO0462
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.447
XOO4316
Acyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.435
FabA
3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.433
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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