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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodBAcetylxylan esterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (294 aa)    
Predicted Functional Partners:
rhgB
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
XOO1090
Glutaredoxin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.677
hmsR
HmsR protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.585
CDA1-2
Polysaccharide deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.520
XOO2992
Glycosyl transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.490
Acs
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.472
XOO4315
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
     0.469
AcpP
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides.
 
     0.457
XOO4312
Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase; Putative; ORF located using Glimmer/Genemark.
 
     0.433
FixC-2
Dehydrogenases (flavoproteins); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.431
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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