Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cit1Citrate carrier protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (479 aa)    
Predicted Functional Partners:
ModA
ABC-type molybdate transport system, periplasmic component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.881
AraJ
Arabinose efflux permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.679
ttuB
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.518
dctA
C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate from the periplasm across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.454
XOO1115
Sensor histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.432
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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