Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO1139Transcriptional antiterminator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (802 aa)    
Predicted Functional Partners:
XOO1138
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.963
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 
 0.779
ampE
Transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
pepQ
Proline dipeptidase; Splits dipeptides with a prolyl residue in the C-terminal position.
       0.739
DedD-2
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.715
HemX
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.709
uptE
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.701
CheW
Chemotaxis signal transduction protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.684
LppC
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.680
xpsL
General secretion pathway protein L; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.663
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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