Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DltEShort-chain dehydrogenases of various substrate specificities; Related to short-chain alcohol dehydrogenases; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (279 aa)    
Predicted Functional Partners:
XOO1187
TPR repeat; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.936
FAA1
Long-chain acyl-CoA synthetases (AMP-forming); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.902
XOO1183
Uncharacterized conserved protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.895
TenA
Putative transcription activator; Putative; ORF located using Glimmer/Genemark.
 
   
 0.895
BaeS-4
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.880
XOO4744
Carbamoylphosphate synthase large subunit (split gene in MJ); Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
 
   
 0.801
OmpR-2
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.775
XOO4745
Hypothetical protein; Putative; ORF located using FrameD.
       0.775
blaI
Transcriptional regulator blaI family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.576
MecR1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
       0.573
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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