STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrB6Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1072 aa)    
Predicted Functional Partners:
XOO4401
Shikimate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.731
doc
Death-on-curing protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
metC
Putative cystathionine gamma-synthase protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.683
MiaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin.
 
     0.662
XOO1236
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.631
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.595
PemB
Pectin methylesterase; Outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family.
  
   
 0.531
XOO3499
Unknown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.475
XOO4036
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
    0.472
Tra5-11
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.460
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.