Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ptrMFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (351 aa)    
Predicted Functional Partners:
XOO4751
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
 
     0.808
soxR
Transcriptional regulator soxR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.633
XOO1382
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.629
XOO3122
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.538
XOO4727
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
     0.515
XOO4388
Nuclease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.478
pmrA
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.460
EmrA-4
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.460
rmrA
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
 
 0.460
CarB
Carbamoylphosphate synthase large subunit (split gene in MJ); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.458
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.