Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CydACytochrome bd-type quinol oxidase, subunit 1; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (527 aa)    
Predicted Functional Partners:
qxtB
Quinol oxidase subunit II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.998
cioB
Cyanide insensitive terminal oxidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.993
cydB
Cytochrome D ubiquinol oxidase subunit II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.973
XOO2662
Predicted outer membrane lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.942
cydA
Cytochrome D ubiquinol oxidase subunit I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 
0.911
cioA
Cyanide insensitive terminal oxidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 
0.901
cydA-2
Cytochrome D ubiquinol oxidase subunit I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
PutA
NAD-dependent aldehyde dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aldehyde dehydrogenase family.
   
  
 0.607
strW
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.586
cyoD
Cytochrome O ubiquinol oxidase subunit IV; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.572
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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