Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yceETransport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (398 aa)    
Predicted Functional Partners:
RhbC
Siderophore synthetase component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.954
iucA
Iron transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.949
CarB
Carbamoylphosphate synthase large subunit (split gene in MJ); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.941
lysA
Diaminopimelate decarboxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.890
fecA-3
Citrate-dependent iron transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.849
mphE
4-hydroxy-2-oxovalerate aldolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the HpcH/HpaI aldolase family.
 
    0.677
avrBs2
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.506
acoK
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.462
stkXac1
Serine/threonine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.416
XOO4272
Proteinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.402
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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