STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nthA-2Nitrilase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (241 aa)    
Predicted Functional Partners:
XOO0231
Ketosteroid isomerase-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.780
XOO1498
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.777
XOO1503
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.708
XOO4762
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
       0.708
nthA
Nitrilase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
      0.624
Tra8-13
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.555
XOO4761
Hypothetical protein; Putative; ORF located using FrameD.
       0.555
Fur
Fe2+/Zn2+ uptake regulation proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the Fur family.
       0.534
gluS
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.531
SplB
DNA repair photolyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.482
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.