Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO1650IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (223 aa)    
Predicted Functional Partners:
Tra5-16
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.871
XOO4777
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
    0.775
XOO3191
IS1389 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.729
XOO3930
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.678
XOO1392
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.652
XOO0622
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.634
radA
DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.550
XOO0236
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.543
XOO2371
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.529
XOO2008
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.516
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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