Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
int-2Phage-related integrase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the 'phage' integrase family. (394 aa)    
Predicted Functional Partners:
XOO1681
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
XOO3434
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.515
XOO3977
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.494
T
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.452
ElsH
Metal-dependent hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.444
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.442
P
Phage-related terminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.438
RhbC
Siderophore synthetase component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.430
E
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.417
iucA
Iron transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.407
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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