Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HipB-2Predicted transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (145 aa)    
Predicted Functional Partners:
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.775
gluS
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
      
 0.770
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.662
E
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.653
FI
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.641
T
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.638
FII
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.633
D
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.614
S
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.595
U
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.584
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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