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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgaBeta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (651 aa)    
Predicted Functional Partners:
lacZ
Truncated beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.969
fucA1
alpha-L-fucosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.935
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.903
dgd
D-galactose 1-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
  0.902
LacZ
Beta-galactosidase/beta-glucuronidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.811
XOO1770
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.719
XOO3922
N-acetylglucosaminidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.705
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.683
XOO1771
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.622
cutC
Copper homeostasis protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
 
   
 0.618
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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