Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EmrA-3Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (471 aa)    
Predicted Functional Partners:
SunT
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.968
raxB
Putative ABC transporter protein RaxB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.967
tolC
TolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.751
yjcP
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.546
lapB
Conserved hypothetical protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
      
 0.510
XOO3499
Unknown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.484
czcA
Cation efflux system protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 
 0.477
oprN
Outer membrane protein OprN precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.475
nodT
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.475
XOO4397
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.444
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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