Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CaiD-2Enoyl-CoA hydratase/carnithine racemase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (390 aa)    
Predicted Functional Partners:
mmsB
3-hydroxyisobutirate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the HIBADH-related family.
 
 0.995
fadE9
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.957
paaF
enoyl-CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 
0.941
mmsA
Methylmalonate-semialdehyde dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.908
mvaB
hydroxymethylglutaryl-CoA lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.863
fadB-3
P-hydroxycinnamoyl CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  0.784
accC-2
Biotin carboxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.698
rpfF
RpfF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.687
CaiD-3
Enoyl-CoA hydratase/carnithine racemase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.671
XOO1841
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.632
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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