Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lig2DNA ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (580 aa)    
Predicted Functional Partners:
YSH1
mRNA 3'-end processing factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.989
XOO1873
Predicted ICC-like phosphoesterases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.962
lhr2
Helicase-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.952
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.920
dnaN
DNA polymerase III beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...]
   
 0.918
XOO0175
Topoisomerase IB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.701
hisB
Imidazoleglycerolphosphate dehydratase/histidinol-phosphate phosphatase bifunctional enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; In the N-terminal section; belongs to the histidinol- phosphatase family.
   
 0.697
holB
DNA polymerase III delta' subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.680
exo
Exodeoxyribonuclease IX; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.665
exoA
Exodeoxyribonuclease III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.503
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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