Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LigT2'-5' RNA ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (247 aa)    
Predicted Functional Partners:
acvB
Virulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.773
XOO1904
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.708
XOO2266
Putative phage replication protein RstA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.682
FimC
P pilus assembly protein, chaperone PapD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.639
XOO4269
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.620
acvB-2
Virulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.582
cirA-4
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.574
fhuA-2
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.568
CDA1-2
Polysaccharide deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.568
XOO0172
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.536
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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