STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FimCP pilus assembly protein, chaperone PapD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (243 aa)    
Predicted Functional Partners:
fasD
Outer membrane usher protein FasD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.968
XOO1979
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.911
pru
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.909
XOO4319
Ketosynthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.656
LigT
2'-5' RNA ligase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.639
rpsB
30S ribosomal protein S2; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the universal ribosomal protein uS2 family.
       0.615
yapH
YapH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.592
OmpV
Outer membrane protein V; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.570
XOO2375
Serine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.554
XOO1918
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.509
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.