STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fasDOuter membrane usher protein FasD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (783 aa)    
Predicted Functional Partners:
ecpD
Pili assembly chaperone; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.988
FimC
P pilus assembly protein, chaperone PapD; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.968
XOO1979
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.956
pru
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.950
yjcP
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.701
nodT
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.701
XOO4319
Ketosynthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.631
aspH
Aspartyl-asparaginyl beta-hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.564
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
    0.554
glnD
protein-PII uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism.
       0.547
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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