STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fhuA-4TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (708 aa)    
Predicted Functional Partners:
fyuA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.519
btuB-3
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.504
FhuE
Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.477
tonB
TonB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.442
cirA-2
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.437
NosD
Nitrous oxidase accessory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.435
XOO4463
Uncharacterized conserved protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
   0.414
XOO4615
Uncharacterized conserved protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
   0.414
Fiu
Outer membrane receptor for monomeric catechols; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
0.413
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.