STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mlrBMlrB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (244 aa)    
Predicted Functional Partners:
yjcP
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.618
pmrB
Multidrug resistance membrane translocase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
     
 0.618
yybA
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.613
pmrA
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.613
bla-2
Beta-lactamase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.573
AmpC
Beta-lactamase class C and other penicillin binding proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.490
dnrO
Repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.460
AraC
AraC-type DNA-binding domain-containing proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.446
XOO4622
Dipeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.403
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.