STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tra5-18Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (282 aa)    
Predicted Functional Partners:
XOO2127
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
XOO2160
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.650
XOO1236
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.594
yybA
Transcriptional regulator marR family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.502
XOO2158
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.488
XOO0106
Possible transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.487
XOO1132
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0149 family.
      
 0.487
XOO1134
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
      
 0.487
XOO1136
Possible transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.487
parC
Topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
      
 0.452
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.