STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
malEABC transporter sugar binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (456 aa)    
Predicted Functional Partners:
lacF
ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.998
lacG
ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.998
ugpC
Sugar ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the ABC transporter superfamily.
 
 
 0.993
GDB1
Glycogen debranching enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.921
XOO2169
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.893
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      
 0.641
Lpd
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.620
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.556
XOO2168
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.541
yehZ
ABC transporter amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.535
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.