Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GDB1Glycogen debranching enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1054 aa)    
Predicted Functional Partners:
malE
ABC transporter sugar binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.921
lacF
ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.885
lacG
ABC transporter sugar permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.880
XOO2169
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.873
xpsJ
General secretion pathway protein J; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.704
XOO2667
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.685
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
      
 0.683
XOO0974
Predicted membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.641
XOO4195
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.634
SerB-2
Phosphoserine phosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.629
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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