Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kefBTransport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (106 aa)    
Predicted Functional Partners:
kefB-2
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.990
kefB-3
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.954
ybaL
Cation:proton antiporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
   
 0.770
flgG
Flagellar biosynthesis cell-distal portion of basal-body rod; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the flagella basal body rod proteins family.
    
   0.624
ihfB
Integration host factor beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
   
 
 0.470
galU
UTP-glucose-1-phosphate uridylyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.470
rfb303
Lipopolysaccharide core biosynthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.465
Epimerase
Epimerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.459
ribA-2
Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.456
XOO2182
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.443
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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