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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
regSTwo-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (433 aa)    
Predicted Functional Partners:
regR
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.999
tctD
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.763
BaeS-2
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.736
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.719
lpdA
Dihydrolipoamide dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.664
PilF
Tfp pilus assembly protein PilF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.652
AtoC-4
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.647
PleD-4
Response regulator containing a CheY-like receiver domain and a GGDEF domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.626
ispG
Conserved hypothetical protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
   
   0.577
PgpB
Membrane-associated phospholipid phosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.567
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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