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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO2265Pectate lyase L precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (259 aa)    
Predicted Functional Partners:
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
  
 
  0.958
pel
Pectate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
  0.939
PemB
Pectin methylesterase; Outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family.
  
  
  0.918
peh-1
Endopolygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
  0.901
DnaC
DNA replication protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.840
XOO3129
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.745
stkXac1
Serine/threonine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.721
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.709
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
 0.709
gumF
GumF protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.708
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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