STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO2279Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1499 aa)    
Predicted Functional Partners:
XOO4401
Shikimate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.731
metC
Putative cystathionine gamma-synthase protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.674
MiaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin.
 
     0.673
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.643
XOO4036
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   0.521
PemB
Pectin methylesterase; Outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family.
  
   
 0.487
engXCA
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.456
XOO3499
Unknown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.452
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
  
    0.417
PqaA
PhoPQ-activated pathogenicity-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.412
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.