Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XOO2344Predicted transmembrane transcriptional regulator (anti-sigma factor); Putative; ORF located using Glimmer/Genemark. (247 aa)    
Predicted Functional Partners:
RpoE
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.901
aprE
Extracellular protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.819
fhuA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.568
prtI
ECF sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.544
rfaY-2
RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family.
  
 
 0.451
tatA
Sec-independent protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
    0.446
PqqL
Zinc protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.437
rfaY
RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.434
algU
RNA polymerase sigma-H factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.434
rpoE
RNA polymerase sigma factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.434
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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