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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO2385IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (278 aa)    
Predicted Functional Partners:
XOO4828
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
    0.776
XOO0982
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.774
XOO0994
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.774
XOO0138
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
XOO1960
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.768
XOO2112
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
XOO3148
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
XOO4233
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
XOO4257
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.768
XOO0208
IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.767
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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