Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XOO2403IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (174 aa)    
Predicted Functional Partners:
XOO2404
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.801
XOO3191
IS1389 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.709
gyrA
DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.497
XOO2371
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.449
XOO2008
IS1404 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.419
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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