STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO2598Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (504 aa)    
Predicted Functional Partners:
vioA
Nucleotide sugar transaminase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.834
HcaE
Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.812
fabH-2
3-oxoacyl- synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.808
acp
Acyl carrier protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.788
XOO2595
Acetyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.780
fabG-3
3-oxoacyl- reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.776
FabG-3
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Related to short-chain alcohol dehydrogenases; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.776
LpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.776
CitB-3
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
fleQ
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.